2013 CE References

Habitat Hydro Hatchery Evaluation Predator Management Biological Opinions News Partners

Ten federal agencies working for endangered salmon and steelhead in the Columbia River Basin

salmonrecovery.gov

FCRPS BiOp Libby BiOp Willamette BiOp Upper Snake BiOp

2013 Comprehensive Evaluation list of references

(Under Construction)

Absolon, R. F., E. E. Hockersmith, G. A. Axel, D. A. Ogden, B. J. Burke, K. E. Frick, and B. P. Sandford. 2008a. Passage Behavior and Survival for Radio-tagged Subyearling Chinook Salmon at Lower Monumental Dam, 2006. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to U. S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Absolon, R. F., E. E. Hockersmith, G. A. Axel, D. A. Ogden, B. J. Burke, K. E. Frick, and B. P. Sandford. 2008b. Passage Behavior and Survival for Radio-Tagged Subyearling Chinook Salmon at Lower Monumental Dam, 2007. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to U. S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Absolon, R. F., E. E. Hockersmith, G. A. Axel, B. J. Burke, K. E. Frick, and B. P. Sandford. 2010. Passage Behavior and Survival of Radio-Tagged Subyearling Chinook Salmon at Lower Monumental Dam, 2008. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to U. S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Abraham, K. and C. Curry. 2012. Upper Middle Fork John Day River Intensively Monitored Watershed. Interim Summary Report. Oregon Watershed Enhancement Board. 13 pp.

ACOE. 2008a. Corps of Engineers Plan of Action for Dissolved Gas Monitoring in 2008. U.S. Army Corps of Engineers, Northwestern Division, Portland, OR.

ACOE. 2008b. Corps of Engineers Plan of Action for Dissolved Gas Monitoring in 2009. U.S. Army Corps of Engineers, Northwestern Division, Portland, OR.

ACOE. 2008c. Corps of Engineers Plan of Action for Dissolved Gas Monitoring in 2010-2014. U.S. Army Corps of Engineers, Northwestern Division, Portland, OR.

ACOE. 2008d. 2008 Dissolved Gas and Water Temperature Monitoring Report: Columbia River Basin. US. Army Corps of Engineers, Northwestern Division, Portland OR. http://www.nwd-wc.usace.army.mil/tmt/wqnew/tdg_and_temp/2008/

ACOE. 2009a. Water Quality Plan for Total Dissolved Gas and Water Temperature in the Mainstem Columbia and Snake Rivers. U.S. Army Corps of Engineers, Northwestern Division, Portland, OR.

ACOE. 2009b. 2009 Dissolved Gas and Water Temperature Monitoring Report: Columbia River Basin. US. Army Corps of Engineers, Northwestern Division, Portland OR. http://www.nwd-wc.usace.army.mil/tmt/wqnew/tdg_and_temp/2009/

ACOE. 2010. 2010 Dissolved Gas and Water Temperature Report: Columbia River Basin. US. Army Corps of Engineers, Northwestern Division, Portland OR. http://www.nwd-wc.usace.army.mil/tmt/wqnew/tdg_and_temp/2010/

ACOE. 2011. 2011 Dissolved Gas and Water Temperature Report: Columbia River Basin. US. Army Corps of Engineers, Northwestern Division, Portland OR. http://www.nwd-wc.usace.army.mil/tmt/wqnew/tdg_and_temp/2011/

ACOE. 2012. 2012 Dissolved Gas and Water Temperature Report: Columbia River Basin. US. Army Corps of Engineers, Northwestern Division, Portland OR. http://www.nwd-wc.usace.army.mil/tmt/wqnew/tdg_and_temp/2012/

U.S. Army Corps of Engineers, Bonneville Power Administration, U.S. Bureau of Reclamation, and NOAA Fisheries. 2012.  Rapid Response and Long-Term Contingency Plan for the FCRPS Adaptive Management Implementation Plan. https://www.salmonrecovery.gov/Files/2011 APR files/2011_RRandLTC_Plan.pdf

Adams, N.S., and Evans, S.D., eds., 2011, Summary of juvenile salmonid passage and survival at McNary Dam—Acoustic survival studies, 2006–09: U.S. Geological Survey Open-File Report 2011-1179, 144 p.

Adams, N.S., and T.L. Liedtke. 2009. Juvenile Salmonid Survival, Passage, and Egress at McNary Dam during Tests of Temporary Spillway Weirs, 2008. Report of research from the U.S. Geological Survey to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Adams, N.S., and T.L. Liedtke. 2010. Juvenile Salmonid Survival, Passage, and Egress at McNary Dam during Tests of Temporary Spillway Weirs, 2009. Report of research from the U.S. Geological Survey to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Adams, N.S., and D.W. Rondorf, eds. 2007. Movement, Distribution, and Passage Behavior of Radio-Tagged Juvenile Chinook Salmon and Steelhead at Bonneville Dam, 2005. Report of Research by the U.S. Geological Survey to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ50458498, Portland, Oregon.

Adams, N.S., Walker, C.E, and Perry, R.W., 2011, A multi-year analysis of passage and survival at McNary Dam, 2004–09: U.S. Geological Survey Open-File Report 2011-1230, 128 p.

AECOM. 2011. Structural and Hydraulic Analysis of Columbia River Pile Dikes. Final report from AECOM Environment, Seattle WA, to the U.S. Army Corps of Engineers, Portland District, Portland OR.

Anderson, J.J., J.L. Gosselin, K.D. Ham. 2012. Snake River Basin Differential Delayed Mortality Synthesis. Prepared by Battelle, Pacific Northwest Division, Richland WA for the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla, WA. Report PNWD-4283.

Anderson, S.K., D.D. Roby, D.E. Lyons and K. Collis. 2007. Relationship of Caspian tern foraging ecology to nesting success in the Columbia River Estuary, Oregon, USA. 2007. Estuarine, Coastal and Shelf Science 73:447-456.

Anglea, S. and J. White. 2012. Effects of Release History, Migration History, and Adult Detection Location on Smolt to Adult Return Rates for Snake River Sockeye Salmon. Report prepared by Biomark Inc. and Quantitative Consultants, Inc for the U.S. Army Corps of Engineers, Walla Walla, WA.

Arterburn, John, Casey Baldwin, Dale Bambrick, Steve Hayes, Tracy Hillman, Tom Kahler, Joe Lange, Russel Langshaw, Keely Murdoch, Chuck Peven, Karl Polivka, Brandon Rogers, Kate Terrell, Mike Ward. 2013. A Biological Strategy to Protect and Restore Salmonid Habitat in the Upper Columbia Region. 279 pp.

Axel, G.A., E. E. Hockersmith, D.A. Ogden, B. J. Burke, K. E. Frick, and B. P. Sandford. 2007a. Passage Behavior and Survival for Radio-Tagged Yearling Chinook Salmon and Steelhead at Ice Harbor Dam, 2005. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA. Contract W68SBV92844866.

Axel, G.A., E. E. Hockersmith, D.A. Ogden, B. J. Burke, K. E. Frick, and B. P. Sandford. 2007b. Passage Behavior and Survival of Radio-Tagged Yearling Chinook Salmon and Steelhead at Ice Harbor Dam, 2006. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA. Contract W68SBV92844866.

Axel, G.A., E. E. Hockersmith, B. J. Burke, K. Frick, B. P. Sandford, W. D. Muir, and R. F. Absolon. 2010a. Passage Behavior and Survival of Radio-Tagged Yearling and Subyearling Chinook Salmon and Juvenile Steelhead at Ice Harbor Dam, 2008. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration, to U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA. Contract W68SBV80438584.

Axel, G. A., E. e. Hockersmith, B. J. Burke, K. Frick, B. P. Sandford, W. D. Muir, R. F. Absolon, N. Dumdei, J. J. Lamb, and M. G. Nesbit. 2010b. Passage Behavior and Survival of Radio-Tagged Yearling and Subyearling Chinook Salmon and Juvenile Steelhead at Ice Harbor Dam, 2009. Report of research by Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA. Contract W68SBV83306729.

Axel, G.A., M. H. Gessel, E. E. Hockersmith, M. Nesbit, and B. P. Sandford. 2011. Evaluation of Juvenile Salmonid Condition (Descaling) Under Different Turbine Operating Conditions at McNary Dam, 2010. Report by National Marine Fisheries Service to the U.S. Army Corps of Engineers Walla Walla District, Seattle, Washington, Contract W66QKZ00146663.

Baker CF. 2008. Seasonal Floodplain Wetlands as Fish Habitat in Oregon and Washington. Doctoral dissertation. Oregon State University, Corvallis.
Beamesderfer, R.C.P, D.L. Ward and A.A. Nigro. 1996. Evaluation of the biological basis for a predator control program on northern squawfish (Ptychocheilus oregonensis) in the Columbia and Snake rivers. Can. J. Fish. Aquat. Sci. 53: 2898-2908

Beechie, T. J., M. M. Pollock and S. Baker. 2008. Channel incision, evolution and potential recovery in the Walla Walla and Tucannon River basins, northwestern USA. Earth Surf. Process. Landforms 33, 784–800. Published online 30 August 2007 in Wiley InterScience (www.interscience.wiley.com) DOI: 10.1002/esp.1578

Beechie, T. J., D. A. Sear, J. D. Olden, G. R. Pess, J. M. Buffington, H. Moir, P. Roni, and M. M. Pollock. 2010.Process-based Principles for Restoring River Ecosystems. BioScience 60 (3):209-222.

Beeman, J. W., S. D. Fielding, A. C. Braatz, T. S. Wilkerson, A. C. Pope, C. E. Walker, J. M. Hardiman, R. W. Perry, and T. D. Counihan. 2007. Survival and Migration Behavior of Juvenile Salmonids at Lower Granite Dam, 2006. Final Report of Research by the U. S. Geological Survey to the U.S. Army Corps of Engineers, Walla Walla District, Contract W68SBV60378208, Walla Walla, Washington.

Beeman, J. 2010. USGS letter to Marvin Shutters, US. Army Corps of Engineers, Walla Walla District, June 8, 2010.

Beeman, J.W., Braatz, A.C., Hansel, H.C., Fielding, S.D., Haner, P.V., Hansen, G.S., Shurtleff, D.J., Sprando, J.M., and Rondorf, D.W., 2010, Approach, passage, and survival of juvenile salmonids at Little Goose Dam, Washington: Post-construction evaluation of a temporary spillway weir, 2009: U.S. Geological Survey Open-File Report 2010-1224, 100 p.

Bellerud, B., R. Graves, and G. Fredricks. 2007. Assessment of the likely survival improvement resulting from enhancement strategies for steelhead kelts (B-run kelts in particular). NOAA Fisheries Kelt Analysis Memorandum to Bruce Suzumoto, September 25, 2007.

Bellmore, J.R., Colden V. Baxter, Patrick J. Connolly, and Kyle Martens. 2012. The floodplain food web mosaic: a study of its importance to salmon and steelhead with implications for their recovery. Preprinted PDF Ecological Society of America manuscript. 59 pp.

Berntson, Ewann A., Robin S. Waples, and Paul Moran. 2013. Monitor and Evaluate the Genetic Characteristics of Supplemented Salmon and Steelhead. National Oceanic and Atmospheric Administration, Seattle, WA, 98112. 37 pp.Bi, H., Peterson, W.T., Lamb, J. and Casillas, E. 2011. Copepods and salmon: characterizing the spatial distribution of juvenile salmon along the Washington and Oregon coast, U.S.A. Fish. Oceanogr., 20, 125-138.

Bi, H., Peterson, W.T., Lamb, J. and Casillas, E. 2011. Copepods and salmon: characterizing the spatial distribution of juvenile salmon along the Washington and Oregon coast, U.S.A. Fish. Oceanogr., 20, 125-138.

Blankenship, S., C. Busack, B. Conner, M. Ford. J. Hesse, A. Marshall, G. Mendel, D. Milks, M. Schuck, M. Small, D. Venditti, R. Waples. Compiled by C. Peven. 2010.  Guidance to Develop Alternatives for Determining the Relative Reproductive Success and Effects on Natural-Origin Fish of Hatchery-Origin Snake River Fall Chinook Salmon. Final report of the Snake River Fall Chinook Hatchery Effects Workgroup to BPA. 17 pages.

Bonneville Power Administration. 2013a. Columbia Basin Tributary Habitat Improvement: A Framework for Research, Monitoring and Evaluation. 58 pp.

Bonneville Power Administration. 2013b.Science and the Evaluation of Habitat Improvement Projects in Columbia River Tributaries.

Borde AB, S.A. Zimmerman, R.M. Kaufmann, H.L. Diefenderfer, N.K. Sather, and RM Thom. 2011.Lower Columbia River and Estuary Restoration Reference Site Study: 2010 Final Report and Site Summaries. PNWD-4262, Battelle–Pacific Northwest Division, Richland, Washington.

Borde, A.B., H.L. Diefenderfer, V.I. Cullinan, and R.M. Thom. In preparation. Vegetation and hydrologic relationships for tidal wetlands in the fluvially dominated Columbia River estuary.

Bottom D.L., C.A. Simenstad, J. Burke, A.M. Baptista, D.A. Jay, K.K. Jones, E. Casillas, and M. Schiewe. 2005. “Salmon at River’s End: The Role of the Estuary in the Decline and Recovery of Columbia River Salmon.” U.S. Department of Commerce, National Oceanic and Atmospheric Administration, Technical Memorandum NMFS-NWFSC-68, Northwest Fisheries Science Center, Seattle, Washington.

Bottom D.L., G. Anderson, A. Baptista, J. Burke, M. Burla, M. Bhuthimethee, L. Campbell, E. Casillas, S. Hinton, K. Jacobson, D. Jay, R. McNatt, P. Moran, G.C. Roegner, C.A. Simenstad, V. Stamatiou, D. Teel, and J.E. Zamon. 2008. Salmon Life Histories, Habitat, and Food Webs in the Columbia River Estuary: An Overview of Research Results, 2002–2006. Report prepared for the U.S. Army Corps of Engineers, Portland District, Northwest Division, Portland, Oregon, and Bonneville Power Administration, Environment, Fish, and Wildlife Division, Portland, Oregon, by the Northwest Fisheries Science Center, National Marine Fisheries Service, Seattle, Washington.

Bottom D.L., A. Baptista, J. Burke, L. Campbell, E. Casillas, S. Hinton, D.A. Jay, M.A. Lott, G. McCabe, R. McNatt, M. Ramirez, G.C. Roegner, C.A. Simenstad, S. Spilseth, L. Stamatiou, D. Teel, and J.E. Zamon. 2011.Estuarine Habitat and Juvenile Salmon: Current and Historical Linkages in the Lower Columbia River and Estuary Final Report 2002-2008. Northwest Fisheries Science Center, National Oceanic and Atmospheric Administration, Seattle, Washington.

Boyd, J.A., K.A. Deters, R.S. Brown, and M.B. Eppard. 2011. Efficacy of Single-Suture Incision Closures in Tagged Juvenile Chinook Salmon Exposed to Simulated Turbine Passage. Transactions of the American Fisheries Society 140:1186-1192

Brodeur, Richard D., William T. Peterson, George W. Boehlert, Ed Casillas, Michael H. Schiewe, Maxwell B. Eldridge, Steven T. Lindley, John H. Helle, and William R. Heard. "A coordinated research plan for estuarine and ocean research on Pacific salmon." Fisheries 25, no. 6 (2000): 7-16.

Brodeur, R.D., Fisher, J.P., Teel, D.J., Emmett, R.L., Casillas, E. and Miller, T.W. 2004. Juvenile salmonid distribution, growth, condition, origin, and environmental and species associations in the Northern California Current. Fish. Bull., 102, 25-46.

Brown R.S., S. J. Cooke, G. N. Wagner, and M. B. Eppard. eds 2010a. Methods for surgical implantation of acoustic transmitters in juvenile salmonids: a review of literature and guidelines for techniques. U.S. Army Corps of Engineers, Portland, Oregon.

Brown, R.S., R.A. Harnish, K.M. Carter, J.W. Boyd, K.A. Deters, and M.B. Eppard. 2010b. An Evaluation Of The Maximum Tag Burden For Implantation Of Acoustic Transmitters In Juvenile Chinook Salmon. North American Journal of Fisheries Management 30:499-505.

Brown R.S., T. J. Carlson, A.J. Gingerich, J.R. Stephenson, B.D. Pflugrath, A. E. Welch, J.R. Skalski, A. G. Seaburg, and R. L. Townsend. 2010. Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro turbine passage. Chapter 2 in T. J. Carlson, R. S. Brown, J.R. Stephenson, A.J. Gingerich, B.D. Pflugrath, A. H. Colotelo, A. E. Welch, P. L. Benjamin, J.R. Skalski, A. G. Seaburg, and R. L. Townsend. 2010c. Assessment of Barotrauma in Untagged and Tagged Juvenile Chinook Salmon Exposed to Simulated Hydro Turbine Passage. PNNL-19625, Pacific Northwest National Laboratory, Richland, Washington.

Brown, R.S., M.B. Eppard, K.J. Murchie, J.L. Neilson and S.J. Cooke. 2011. An Introduction To The Practical And Ethical Perspectives On the Need to Advance and Standardize the Intracoelomic Surgical Implantation of Electronic Tags in Fish. Advancing the Science and Practice of Surgical Implantation of Electronic Tags in Fish: Reviews in Fish Biology and Fisheries Special Issue Volume 21:1-9

Brown, R.S., T. J. Carlson, A.J. Gingerich, J.R. Stephenson, B.D. Pflugrath, A. E. Welch, M. J. Langeslay, M. L. Ahmann, R. L. Johnson, J.R. Skalski, A. G. Seaburg, and R. L. Townsend. 2012. Quantifying mortal injury of juvenile Chinook salmon exposed to simulated hydro-turbine passage. Transactions of the American Fisheries Society 141(1):147-157.

Brown, R.S., E. W. Oldenburg, A. G. Seaburg, K. V. Cook, J.R. Skalski, M.B. Eppard, and K.A. Deters. 2013. Survival of sea-ward migrating PIT and acoustic-tagged juvenile Chinook salmon in the Snake and Columbia Rivers: an evaluation of length-specific tagging effects. Animal Biotelemetry 2013, 1:8.

Buchanan, R.A., J.R. Skalski, R.L. Townsend, and K.D. Ham. 2011. The effect of bypass passage on adult returns of salmon and steelhead: An analysis of PIT-tag data using the program ROSTER. Contract # W912EF-08-D-0004 D04. U.S. Army Corps of Engineers, Walla Walla District, WA.

Buhle ER, Holsman KK, Scheuerell MD, Albaugh A (2009) Using an unplanned experiment to evaluate the effects of hatcheries and environmental variation on threatened populations of wild salmon. Biological Conservation 142, 2449-2455.

Burke, J.L. 2004. Life Histories of Juvenile Chinook Salmon in the Columbia River Estuary, 1916 to the Present. Masters Thesis, Oregon State University, Corvallis, OR

Burla, M., Baptista, A.M., Casillas, E., Williams, J.G. and Marsh, D.M. 2010. The influence of the Columbia River plume on the survival of steelhead (Oncorhynchus mykiss) and Chinook salmon (Oncorhynchus tshawytscha): a numerical exploration. Can. J. Fish. Aquat. Sci., 67, 1671-1684.

Burnham, K. P., D. R. Anderson, G. C. White, C. Brownie, and K. H. Pollock. 1987. Design and analysis methods for fish survival experiments based on release-recapture. American Fisheries Society, Monograph 5, Bethesda, Maryland.

Campbell L.A. 2010. “Life Histories of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Columbia River Estuary as Inferred from Scale and Otolith Microchemistry.” M.S. Thesis, Oregon State University, Corvallis, Oregon.

Carlson, T. J., J. P. Duncan, and Z. Deng. 2008. Data overview for Sensor Fish samples acquired at Ice Harbor, John Day, and Bonneville II dams in 2005, 2006, and 2007. Report of the Pacific Northwest National Laboratory for the US Army Corps of Engineers, Portland, Oregon, Contract # DE-AC05-76RL01830.

Carlson, T. J., R. S. Brown, J.R. Stephenson, A.J. Gingrich, B.D. Pflugrath, A. H. Colotelo, A. E. Welch, P. L. Benjamin, J.R. Skalski, A. G. Seaburg, and R. L. Townsend. 2010. Assessment of barotrauma in untagged and tagged juvenile Chinook salmon exposed to simulated hydro turbine passage. Prepared by Pacific Northwest National Laboratory for the U. S. Army Corps of Engineers, Portland, Oregon, under Contract DE-AC05-76RL01830.

Carlson, T. J., Z. D. Deng, R. S. Brown, A. H. Colotelo, J. J. Martinez, B.D. Pflugrath, T. K. Abel, J. M. Janak, A. P. LeBarge, J.R. Stephenson, R. P. Mueller, and A. G. Seaburg. 2011. Design, production, and assessment of a neutrally buoyant externally attached acoustic transmitter for studying behavior and survival of juvenile salmonids. Prepared by Pacific Northwest National Laboratory for the U. S. Army Corps of Engineers, Portland, Oregon, under Contract DE-AC05-76RL01830.

Carmichael, Richard W., Tim Hoffnagle, Joseph Feldhaus, Debra Eddy, Nick Albrecht. 2008. Catherine Creek Spring Chinook Salmon Hatchery Program Review. Oregon Department of fish and Wildlife, 203 Badgley Hall, EOU, One University Blvd., La Grande, Oregon, 97850. 21 pp.

Carter, K.M., CM Woodley, and R.S. Brown. 2011. A Review of Tricaine Methanesulfonate for anesthesia of Fish. Advancing the Science and Practice of Surgical Implantation of Electronic Tags in Fish: Reviews in Fish Biology and Fisheries Special Issue Volume 21: 51-60

(CEERP) Bonneville Power Administration/U.S. Army Corps of Engineers (BPA/USACE). 2013a. Columbia Estuary Ecosystem Restoration Program: 2013 Strategy Report. Final report, prepared by Bonneville Power Administration and U.S. Army Corps of Engineers, Portland, OR.

(CEERP) Bonneville Power Administration/U.S. Army Corps of Engineers (BPA/USACE). 2013b. Columbia Estuary Ecosystem Restoration Program: 2013 Action Plan. Draft, prepared by Bonneville Power Administration and U.S. Army Corps of Engineers, Portland, OR.

Clabough T.S., M.A. Jepson, C.C. Caudill, and C.A. Peery. Influence of Water Temperature on Adult Salmon and Steelhead Passage and Behavior at Lower Granite Dam, 2008. Department of Fish and Wildlife Resources, University of Idaho, Technical Report 2009-7 for U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA.

Coleman A.M., H.L. Diefenderfer, D.L. Ward, and A.B. Borde. In prep.. “Spatially Based Area-Time Inundation Index Model Applied in Tidal Wetlands of the Lower Columbia River and Estuary.” River Research and Applications.

Colotelo, A.H., B.W. Jones, R.A. Hamish, G.A. McMichael, K.D. Ham, Z.D. Deng, G.M. Squeochs, R.S. Brown, M.A. Weiland, G.R. Ploskey, X. Li, and T. Fu. 2013. Steelhead Kelt Passage Distributions and Federal Columbia River Power System Survival for Fish Tagged above and at Lower Granite Dam. Battelle, Pacific Northwest Division, prepared for the U.S. Army Corps of Engineers, Walla Walla District, Walla Walla WA. PNNL-22101.

Columbia River Regional Forum, Technical Management Team. December 5, 2012. 2012 Year End Review Session. http://www.nwd-wc.usace.army.mil/tmt/agendas/2012/1205_Agenda_Year_End.html

Connolly, Patrick J., Ian G. Jezorek, and Kyle D. Martens. 2008. Measuring the Performance of Two Stationary Interrogation Systems for Detecting Downstream and Upstream Movement of PIT-Tagged Salmonids. U.S. Geological Survey, Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA. 17 pp.

Cooke, S. J., C. M. Woodley, M.B. Eppard, R. S. Brown, and J. L. Nielsen. 2011. Advancing the surgical implantation of electronic tags in fish: a gap analysis and research agenda based on a review of trends in intracoelomic tagging effects studies. Reviews in Fish Biology and Fisheries 21:127-151; DOI 10.1007/s11160-010-9193-3.

Cooper, M. 2012. Review of Entiat Basin spring Chinook spawning population, 2000 – 2012. DRAFT memo from M. Cooper to W. Gale, USFWS, Leavenworth, WA.

Counihan, T.D., J. Hardiman, C Walker, A. Puls, and G. Holmberg. 2006a. Survival estimates of migrant juvenile salmonids through Bonneville Dam using Radio Telemetry, 2004. Final report of research by the US Geological Survey to the US Army Corps of Engineers, Portland District, Portland, Oregon.

Counihan, T., J. Hardiman, C. Walker, A. Puls, and G. Holmberg. 2006b. Survival estimates of migrant juvenile salmonids through Bonneville Dam using radio telemetry, 2005. Final report of research by the US Geological Survey to the US Army Corps of Engineers, Portland District, Portland, Oregon.

Crandall, John D. 2009. Elbow Coulee Floodplain Reconnection and Side Channel Restoration Project, 2008-2009 Monitoring Report. 21 pp.

Crandall, John D. 2010.Elbow Coulee Floodplain Reconnection and Side Channel Restoration Project, 2010 Post-Project Assessment Report. 4 pp.

Crandall, John D. 2013. More Fish Use Reconnected Side Channel near Elbow Creek. 12 pp.

CREST (Columbia River Estuary Study Taskforce). 2012. Habitat, Salmon, and Salmon Prey Effectiveness Monitoring. Ft. Clatsop South Slough & Alder Creek Synthesis Report 2007-2011. Prepared for the Lower Columbia River Estuary Partnership, Astoria, Oregon

Cushing A.W., S.A. Zimmerman, D.M. Faber, RE Durham, R.L. Townsend, J.R. Skalski, J. Kim, E.S. Fischer, and M.M. Meyer. 2009. Acoustic Telemetry Evaluation of Juvenile Salmonid Passage and Survival at John

Day Dam with Emphasis on the Prototype Surface Flow Outlet, 2008. PNNL-18890, Pacific Northwest National Laboratory, Richland, Washington.

Daly, E.A., Benkwitt, C.E., Brodeur, R.D., Litz, M.N.C. and Copeman, L.A. 2010. Fatty acid profiles of juvenile salmon indicate prey selection strategies in coastal marine waters. Mar. Biol., 157, 1975-1987.

Dawley, E.M., R.D. Ledgerwood, T.H. Blahm, C.W. Sims, J.T. Durkin, R.A. Kirn, A.E. Rankis, G.E. Monan, and F.J. Ossiander. 1986. Migrational Characteristics, Biological Observations, and Relative Survival of Juvenile Salmonids Entering the Columbia River Estuary, 1966-1983. Report to Bonneville Power Admin., Portland, OR by NOAA Fisheries, Northwest Fisheries Science Center, Seattle, WA. Contract DACW57-85-F-0623, 256 p.

Deng, Z. D., M. A. Weiland, T. Fu, T. A. Seim, B. L. LaMarche, E. Y. Choi, T. J. Carlson, and M. B. Eppard. 2011. A cabled acoustic telemetry system for detecting and tracking juvenile salmon: part 2. Three-dimensional tracking and passage outcomes. Sensors 11:5661-5676; doi:10.3390/s110605661.

Deters, K. A., R. S. Brown, K. M. Carter, J. W. Boyd, M.B. Eppard, and A. G. Seaburg. 2010. Performance assessment of suture type, water temperature, and surgeon skill in juvenile Chinook salmon surgically implanted with acoustic transmitters. Transactions of the American Fisheries Society 139:888-899.

Deters, K. A., R. S. Borwn, J. W. Boyd, M.B. Eppard, and A. G. Seaburg. 2012. Optimal sututring technique and number of sutures for surgical implantation of acoustic transmitters in juvenile salmonids. Transactions of the American Fisheries Society 141:1-10.

Dey, D.B. 2012. Estimation of Percentages for Listed Pacific Salmon and Steelhead Smolts Arriving at Various Locations in the Columbia River Basin in 2011. NOAA Fisheries memo to J.J. Lecky, March 6, 2012.

Diefenderfer H.L., G.E. Johnson, N.K. Sather, J.R. Skalski, E.M. Dawley, and AM Coleman. 2010. Evaluation of Life History Diversity, Habitat Connectivity, and Survival Benefits Associated with Habitat Restoration Actions in the Lower Columbia River and Estuary, Annual Report 2009. PNNL-19410, prepared for the U.S. Army Corps of Engineers, Portland District, Portland, Oregon, by the Pacific Northwest National Laboratory, U.S. Fish and Wildlife Service, and University of Washington.

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